% rubber: module pdftex
% halchenko_vita.tex
% Academic vita for Yaroslav O. Halchenko
% Based on the "ModernCV" template by Xavier Danaux
% which was adopted by Dylan D. Wagner and served me an example
% License: http://creativecommons.org/licenses/by-nc-sa/3.0/
%=============================================================
%---Document Class
\documentclass[11pt,letterpaper,resume,roman]{moderncv}
% Font sizes: 10, 11, or 12; 
% paper sizes: a4paper, letterpaper, a5paper, legalpaper, executivepaper or landscape; 
% font families: sans or roman

\usepackage[bottom]{footmisc}

%---Configure moderncv style
\moderncvstyle{classic}
% CV theme - options include: 'casual' (default), 'classic', 'oldstyle' and 'banking'

\moderncvcolor{blue} 
% CV color - options include: 'blue' (default), 'orange', 'green',
%                             'red', 'purple', 'grey' and 'black'
\setlength{\hintscolumnwidth}{2.5cm} % Sets the width of the dates column
%\setlength{\makecvtitlenamewidth}{10cm}
% For the 'classic' style, adjusts the width of the space allocated to name

\usepackage{moderntimeline}
\tlmaxdates{1994}{2024}
%\tlwidth{0.8ex}
% Set the labels text size
%\tltext{\tiny}
%\tltextstart[south east]{\scriptsize}
%\tltextend[south west]{\scriptsize}

% both seems to be of no effect :-/

%\usepackage{hyperref}
% \newcommand\Colorhref[3][cyan]{\href{#2}{\small\color{#1}#3}}
\AtBeginDocument{\hypersetup{pdfborder = 0 0 1,linkcolor=blue}}

\usepackage{xstring}
\def\nohttp#1{%
    \StrSubstitute{#1}{http://}{}{}}
%\newcommand{\phref}[2]{\href{#2}{#1} (\href{#2}{\nohttp{#2}})}
\newcommand{\phref}[2]{#2 (\href{#1}{#1})}
\newcommand{\phttphref}[2]{#2 (\href{http://#1}{#1})}
\newcommand{\phttpshref}[2]{#2 (\href{https://#1}{#1})}

\newcommand{\datastandards}{\color{red}{[Data Standards]}}
\newcommand{\datasharing}{\color{red}{[Data Sharing]}}
\newcommand{\datasharinghref}[1]{\href{#1}{\datasharing}}

\newcommand{\open}[1]{{\color{orange}{[#1]}}}
\newcommand{\openaccess}{\includegraphics[width=0.5em]{pics/Open_Access_logo_PLoS_white.pdf}}
\newcommand{\openaccesshref}[1]{\href{#1}{\openaccess}}
\newcommand{\openaccessdoi}[1]{\openaccesshref{http://dx.doi.org/#1}}
\newcommand{\preprint}[1]{\href{http://dx.doi.org/#1}{\open{Preprint}}}
\newcommand{\osphttphref}[2]{#2 (\href{http://#1}{#1}) {\href{http://#1}{\open{Open Science}}}}
\newcommand{\ophttphref}[2]{#2 (\href{http://#1}{#1})  {\href{http://#1}{\open{Open Source Software}}}}
\newcommand{\phttp}[1]{\href{http://#1}{#1}}
\newcommand{\phttps}[1]{\href{https://#1}{#1}}

\newcommand{\ie}[0]{\emph{i.e.},\ }
\newcommand{\eg}[0]{\emph{e.g.},\ }
\newcommand{\etc}[0]{\emph{etc.}}



\usepackage[]{natbib}           % To make workaround work
% workaround for bibentry + hyperref
\makeatletter
\let\saved@bibitem\@bibitem
\makeatother
\usepackage{bibentry}           % To automate inclusion of references
                                % separately in 2 sections

% yoh: dislikes automatic commas
\renewcommand*{\cventry}[7][.25em]{%
  \cvitem[#1]{#2}{%
    {\bfseries#3}%
    \ifthenelse{\equal{#4}{}}{}{\ifthenelse{\equal{#3}{}}{}{,} {\slshape#4}}%
    \ifthenelse{\equal{#5}{}}{}{, #5}%
    \ifthenelse{\equal{#6}{}}{}{, #6}%
    \ifthenelse{\equal{#4#5#6}{}}{}{\strut}%
    \ifx&#7&%
      \else{\newline{}\begin{minipage}[t]{\linewidth}\small#7\end{minipage}}\fi}}

\newcommand{\hurl}[1]{\href{http://#1}{#1}}
\def\Cplusplus{C++} % {\rm C\raise.5ex\hbox{\small ++}}}

\usepackage[papersize={8.5in,11in},
left=0.5in, right=0.5in, top=0.5in, bottom=0.7in]{geometry}

%---Load packages
%\usepackage[]{a4wide}   %Wider margins
\usepackage[]{times}    %Nicer fonts
% Provides special list environments and macros to create new ones
\usepackage[shortlabels]{enumitem}
%\usepackage{doi}

%---Information for makecvtitle
\firstname{Yaroslav O.} % Your first name
\familyname{Halchenko} % Your last name  , Ph.D.
% All information in this block is optional, comment out any lines you don't need
%\title{Department of Psychological and Brain Sciences, Dartmouth College}
\address{6207 Moore Hall}{Dartmouth College}
\mobile{Hanover, NH 03755}
% \phone{(603) 646-9834}
% \fax{(603) 398-1138}
\email{career@oneukrainian.com}
\social[twitter]{yarikoptic}
\social[github]{yarikoptic}
\social[linkedin]{yarik}
\homepage{centerforopenneuroscience.org} %haxbylab.dartmouth.edu/ppl/yarik.html}%{haxbylab.dartmouth.edu/ppl/yarik.html} % The first argument is the url for the clickable link, the second argument is the url displayed in the template - this allows special characters to be displayed such as the tilde in this example
\extrainfo{
%  \hurl{http://centerforopenneuroscience.org}
  \hurl{orcid.org/0000-0003-3456-2493}
%  \hurl{github.com/yarikoptic}
%  \hurl{ohloh.net/accounts/yarikoptic}
 }
% \hurl{plus.google.com/+YaroslavHalchenko}}

%can use newline in cventry items to space things out. 
%\newline{}\newline{}


% %Stuff for bib
 \makeatletter
  \setlength{\bibhang}{0em}
  \newlist{bibenum}{enumerate}{3}
  \setlist[bibenum]{label=[\arabic*],resume,leftmargin={2.8cm},%
          itemindent=-\bibhang,
          itemsep=\bibsep,parsep=\z@,partopsep=0pt,
          topsep=0pt}
  \let\oldendbibenum\endbibenum
  \def\endbibenum{\oldendbibenum\vspace{-.6\baselineskip}}
  \let\oldendbibsection\endbibsection
  \def\endbibsection{\oldendbibsection\vspace{-.6\baselineskip}}
  \makeatother

% There was some API breakage for tllabelcventry. Worked with
% texlive-latex-extra 2018.20190227-2 (buster) but then stopped with 2019.202000302-1
\newcommand{\ytllabelcventry}[9]{\tllabelcventry{#1}{#2}{\hspace{#3}#4}{#5}{#6}{#7}{#8}{#9}}
% if boring numbers are desired instead of pleasing graphics:
%\def\boringnumbers{}
\ifdefined\boringnumbers%
\renewcommand{\ytllabelcventry}[9]{\cventry{#4}{#5}{#6}{#7}{#8}{#9}}%
\renewcommand{\tldatecventry}[6]{\cventry{#1}{#2}{#3}{#4}{#5}{#6}}%
\renewcommand{\tlcventry}[7]{\cventry{#1--\ifthenelse{\equal{#2}{0}}{current}{#2}}{#3}{#4}{#5}{#6}{#7}}%
\fi

\newcommand{\gschttp}[1]{\href{http://scholar.google.com/citations?user=EbtfZcwAAAAJ}{#1}}%

%
%----------------------------------------------------------------------------------------
\begin{document}
\makecvtitle % Print the CV title

\vspace{-2em}

\section{Education and Training}
\ytllabelcventry{2009}{2012}{-1.5em}{2012--2013}{Postdoctoral Fellow}{}{}{}{
  Department of Psychological \& Brain Sciences, Dartmouth College\newline
  Adviser: \href{mailto:James.V.Haxby\@dartmouth.edu}{Dr. James V. Haxby}}
\ytllabelcventry{2004}{2009}{-1em}{2004--2009}{Ph.D. in Computer Science}{}{}{}{
  Computer Science Department, NJIT (NJ Institute of Technology)\newline
  Adviser: \href{mailto:jose\@rubic.rutgers.edu}{Dr. Stephen J. Hanson}, Rutgers-Newark}
\ytllabelcventry{2000}{2003}{-1.5em}{2000--2003}{M.S. in Computer Science}{}{}{}{
  Computer Science Department, UNM (University of New Mexico)\newline
  Adviser: \href{mailto:barak\@cs.nuim.ie}{Dr. Barak Pearlmutter}}
\ytllabelcventry{1994}{1999}{-0.8em}{1994--1999}{M.S. in Laser and Optoelectronic Engineering}{}{}{}{
  Computer Systems Department, VSTU (Vinnytsia State Technical University), Ukraine}
\tldatecventry{1994}{Graduated with honors}{}{}{}{
  Physics and Mathematical Gymnasia No.17, Ukraine}

\section{Employment}

\tlcventry{2018}{0}{Research Associate Professor}{}{}{
  \href{http://www.dartmouth.edu/~pbs}{Department of Psychological \& Brain Sciences},
  \href{http://www.dartmouth.edu/~ccn}{Center for Cognitive Neuroscience},
  \href{http://dbic.dartmouth.edu}{Dartmouth Brain Imaging Center},
  Dartmouth College}{
  \begin{itemize}[leftmargin=1em,parsep=0em]
  \item Leading the \phttphref{centerforopenneuroscience.org}{Center for Open Neuroscience (CON)} at Psychological
    and Brain Sciences Department
  \item Leading a number of (inter)national data and computational archives and distributions:
  \begin{itemize}
    \item PI of the distributed data management and distribution platform:
      \phttphref{datalad.org}{DataLad} (NSF CRCNS) [\ref{datalad-joss21}]
    \item Co-PI of the BRAIN Initiative Distributed Archives for Neurophysiology Data Integration:
      \phttphref{dandiarchive.org}{DANDI} (NIH R24)
    \item The lead of the \phttphref{datasets.datalad.org}{DataLad
        distribution} of over 260 TB of neural data
    \item Providing historical archive of the
      \phttphref{singularity-hub.org}{Singularity Hub} distribution of
      computational containers
    \item The lead of the computation platform for neuroscience:
      \phttphref{neuro.debian.net}{NeuroDebian} [\ref{HH12}]
  \end{itemize}
  \item Leading TR\&D3 of the Center for Reproducible Neuroimaging Computation:
    \phttphref{repronim.org}{ReproNim} (NIH P41)
    \begin{itemize}
    \item Neuroimaging Computational Environments Manager:
      \phttphref{niceman.repronim.org}{ReproMan, formerly NICEMAN}
%    \item training materials for the reproducible neuroimaging:
%      \phttphref{www.reproducibleimaging.org/module-reproducible-basics}{ReproNim --  Reproducible Basics\\}
    \item automated system for collection of MR BIDS datasets (deployed at
      DBIC): \phttphref{reproin.repronim.org}{ReproIn/HeuDiConv}
    \end{itemize}
  \item Contributing to the development of data standards: BIDS
    [\ref{bids:1.7.0}, \ref{YMV+19}], NWB, NIDM(-PROV), etc.
  \item Designing and/or implementing various methodological, instrumentation, and
    software developments for open neuroscience:
    % \begin{itemize}
    %\item
      statistical learning analysis of neural data:
      \phttphref{pymvpa.org}{PyMVPA} [\ref{HHS+09a}, \ref{HHS+09b}], 
    %\item
      automated citation of software and data:
      \phttphref{duecredit.org}{DueCredit}, etc. Visit
      \phttp{centerforopenneuroscience.org/projects} for more information.
    % \end{itemize}
  \item Research projects in visual perception [\emph{e.g.,}
    \ref{VHG+17}, \ref{NCO+17}, \ref{CSG+16}], neuroimaging biomarkers
    for depression [\emph{e.g.,} \ref{MSH+21}, \ref{SHR+22}], and explaining the
    ``noise'' variance in MRI data [\ref{CH20}].
  \end{itemize}
}

\tlcventry{2016}{2018}{Research Assistant
  Professor}{}{}{
  \href{http://www.dartmouth.edu/~pbs}{Department of Psychological \& Brain Sciences},
  \href{http://www.dartmouth.edu/~ccn}{Center for Cognitive Neuroscience},
  \href{http://dbic.dartmouth.edu}{Dartmouth Brain Imaging Center},
  Dartmouth College}{
}

\tlcventry{2016}{0}{Adjunct Research Professor}{}{}{\href{http://cs.dartmouth.edu}{Department of
    Computer Science}, Dartmouth College}{
\begin{itemize}[leftmargin=1em,parsep=0em]
\item Working with undergraduate students (independently, as a part
  of the Women in Science Project, or as a thesis co-advisor)
\end{itemize}
}

\tlcventry{2013}{2015}{Research
  Scientist}{}{}{\href{http://www.dartmouth.edu/~ccn}{Center for
    Cognitive Neuroscience}, Dartmouth College}{
\begin{itemize}
\item Visual perception: effects of familiarity on face identification
  [\ref{GGH+13}, \ref{GGH+13b}]
\item Participating in Haxby lab's methodological developments for
  neuroimaging data analysis: hyperalignment [\ref{HGC+11}], RSA [\ref{CGG+12}], clustering, \etc
\item Work on \phttphref{pymvpa.org}{PyMVPA},
  \phttphref{neuro.debian.net}{NeuroDebian},
  \phttphref{datalad.org}{DataLad} and other scientific software projects
\end{itemize}
}

\ytllabelcventry{2005}{2009}{-1.5em}{2005--2009}{Computing Cluster System Administrator}{}{}{Rutgers-Newark, NJ}{
Deployment and maintenance of 27 node high availability cluster running GNU/Linux Debian OS
}

\ytllabelcventry{2003}{2009}{-1.2em}{2003--2009}{Research Assistant}{}{}%
{\href{http://www.rumba.rutgers.edu}{Mind/Brain RUMBA Laboratory}, Rutgers-Newark, NJ}{
   \begin{itemize}[leftmargin=1em,parsep=0em]
   \item Predictive decoding and fusion of the neural data from and
     across different imaging modalities (e.g. EEG, fMRI) to gain
     better understanding of perception (e.g. auditory) and cognitive
     (e.g. category specific processing) neuroscientific problems [\ref{PHH09}-\ref{HRH+07}]
   \item Graphical modeling of functional brain organization [\ref{RHH+10}]
   \end{itemize}
}

\ytllabelcventry{2000}{2002}{-1.5em}{2000--2002}{Research Assistant}{}{}
{\href{http://www-bcl.cs.unm.edu}{Brain and Computation Laboratory}, UNM Albuquerque, NM}{
   Implementation and deployment of ICA (Independent Component
   Analysis) techniques for processing of MEG (Magnetoencephalography)
   data as a part of the DreamMon project
}

\ytllabelcventry{1996}{1997}{-1.5em}{1996--1997}{Software Developer}{}{}%
{\href{http://www.webliana.com.ua}{Liana Company}, Vinnytsia, Ukraine}{
 Automated system for Planned-Economic Department of Vinnytsia Chemical Plant (Himprom)
}

\ytllabelcventry{1993}{1997}{0em}{1993--1997}{Research Assistant}{}{}{}%
{VSTU, Vinnytsia, Ukraine\\
   System for diagnostics of vertebral column. System later was utilized in national hospitals of
   Ukraine
}

\section{Technical Skills}

\cvitem{Programming}{\vspace{-2em}
\begin{itemize}[leftmargin=1em,parsep=0em]
\item More than 20 years of experience with software
  development under GNU/Linux OS:  Python, shell
  scripting, Version Control Systems (CVS, subversion, git,
  git-annex), debugging (gdb, pdb, bashdb, ddd), troubleshooting
  (valgrind, strace), profiling, \emph{etc.}
\item Years of use and contributions to a wide-range of Python
  libraries for generic (\eg\ NumPy, SciPy, sklearn, pandas,
  statsmodels) and neuroimaging-oriented (\eg nibabel, nipy, nipype)
  scientific Python libraries
\item Experience with generic build frameworks (make, cmake),
  continuous integration platforms (\emph{e.g.} buildbot,
  \href{http://travis-ci.org}{Travis-CI},   \href{https://www.appveyor.com/}{AppVeyor})
\item Varying programming experience in other functional (ELisp,
  Standard ML) and imperative (C/\Cplusplus(g++), Java, JavaScript,
  Perl, PHP) languages, and computational environments (Matlab/Octave)
\item Past working experience in software development on MS DOS and
  Windows Platforms (Turbo Pascal, VBA, Inprise Delphi) and Database
  design (DBE, ODBC, Postresql, MySQL)
\item Strong background in object-oriented programming methods
  and Design Patterns
\item Experienced writer of high quality well documented code. Coding
  practice includes peer programming, code reviews, careful
  troubleshooting and debugging of own code and code of others, bug
  triaging, profiling, versioning, unit-, doc- and regression testing,
  release management
\end{itemize}
}
\vspace{-1em}
\cvitem{Systems Administration}{\vspace{-2em}
\begin{itemize}[leftmargin=1em,parsep=0em]
\item Servers and high throughput clusters administration and
  monitoring (DNS, NFS, SSH, NAT, Torque, Ganglia, Maui, SGE,
  HTCondor)
\item Automated provisioning of bare and virtualized deployments
  (Debian FAI, cfengine2, Ansible)
\end{itemize}
}

\section{Grant Proposals Writing}

\cvitem{Lead}{Multiple NSF (CRCNS and OCI programs) and R01/R24/P41 NIH proposals}
%
\cvitem{Participant}{Two BD2K,
  two P41 (+renewal), two R01, one R25, and one R24 NIH proposals as a Co-PI,
  Sub-PI, or Co-I}
%
\cvitem{Pre-application}{Moore foundation, NSF BRAIN EAGER}
\cvitem{Reviewer}{NIH BRAIN Initiative (Data Archives, Integration,
  and Standards); Other NIH ad-hoc panels; Kavli Foundation ``NeuroData Discovery Awards''; Leibniz Competition }
\cvitem{Overall}{Led or participated in submission of over 30 grant proposals}


\section{Current Funding}

\cvitem{Co-PI}{NIH
  \href{https://projectreporter.nih.gov/project_info_details.cfm?aid=9795271&map=y}{\#1R24MH117295}
  \phttphref{dandiarchive.org}{{DANDI}: Distributed Archives for Neurophysiology Data Integration}}

\cvitem{Subcontract PI, TR\&D lead}{NIH
  \href{https://projectreporter.nih.gov/project_info_details.cfm?aid=10334133&map=y}{\#2P41EB019936-06A1}
  \phttphref{repronim.org}{{ReproNim}: A Center for Reproducible Neuroimaging Computation. PI: Kennedy}}

\cvitem{Co-I}{NIH
  \href{https://reporter.nih.gov/project-details/10451257}{\#2R24MH117179-06}
  {OpenNeuro}: An open archive for analysis and sharing of {BRAIN} Initiative data.  PI: Poldrack}

\cvitem{Co-I}{NIH \href{https://reporter.nih.gov/search/eAAnNspBPUOTPlctALcBIQ/project-details/10520678}{\#1R01MH127199-01A1} Infrastructure for hyperaligning fMRI data and estimating functional topographies. PIs: Haxby, Gobbini}

\cvitem{Co-I}{NIH \href{https://reporter.nih.gov/search/syibxmC5uEaxdcE1uXyldQ/project-details/10585582}{\#1R01MH129397-01A1} Personalized spatiotemporal hemodynamic response models for functional magnetic resonance imaging. PIs: Lindquist, Wager }


\section{Past Funding}

\cvitem{PI}{NSF
  \href{http://www.nsf.gov/awardsearch/showAward?AWD_ID=1912266}{\#1912266}
  \phttphref{datalad.org}{{DataLad} - a decentralized system for integrated discovery, management, and publication of digital objects of science}}

\cvitem{PI}{NSF
  \href{http://www.nsf.gov/awardsearch/showAward?AWD_ID=1429999}{\#1429999}
  \phttphref{datalad.org}{CRCNS US-German Data Sharing: Converging catalogues,
    warehouses, and deployment logistics into a federated 'data
    distribution'}}

\cvitem{Subcontract PI, TR\&D lead}{NIH
  \href{https://projectreporter.nih.gov/project_info_details.cfm?aid=8999833&map=y}{\#1P41EB019936-01A1}
  \phttphref{repronim.org}{Center for Reproducible Neuroimaging Computation (CRNC)}}



\section{Professional Activities}

\subsection*{SERVICE \& OUTREACH}

\tldatecventry{2024}{Participant}{BIDS Maintainers meeting}{Seattle, WA}{  \datastandards }{}{}
\tldatecventry{2024}{Plenary Speaker/Participant}{\phttphref{uwescience.github.io/2024-open-source-standards-workshop/intro.html}{NSF
    POSE: Towards an open source model for data and metadata standards}}{NSF, Alexandria, VA}{ \datastandards \open{Open Source Software} }{}{}
\tldatecventry{2024}{Co-Organizer, Speaker}{\phttphref{distribits.live}{distribits conference}}{Dusseldorf, Germany}{ \open{Open Source Software} }{}{}
\tlcventry{2024}{0}{US-RSE Member}{}{}{ \datastandards \open{Open Source Software} }{}{}
\tldatecventry{2024}{Participant}{BIDS Maintainers meeting}{Copenhagen, Denmark}{  \datastandards }{}{}
\tlcventry{2023}{0}{HPC Containers Advisory Council Member}{}{}{  \datastandards }{}{}
\tlcventry{2022}{0}{BossDB Standards Working Group Member}{}{}{  \datastandards }{}{}
\tlcventry{2022}{0}{NWB standard Technical Advisory Board Member}{}{}{  \datastandards }{}{}
\tlcventry{2022}{2024}{BIDS standard Steering Group Member}{}{}{  \datastandards }{}{}

\tlcventry{2021}{2022}{Program Committee}{}{\osphttphref{neurodatawithoutborders.github.io/nwb\_hackathons/HCK12\_2022\_Remote}{NWB-DANDI Remote Developer Hackathon}  \datastandards }{}{}

\tlcventry{2021}{2022}{Member}{}{\phttphref{www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3313}{OHBM Technology Task Force}}{}{}

\tlcventry{2020}{0}{Advisory Committee Member}{}{\phttphref{www.dartmouth.edu/dbic}{Member of the Dartmouth Brain Imaging Center (DBIC) Steering Committee} }{}{}

\tldatecventry{2020}{Instigator}{}{\osphttphref{datalad-datasets.github.io/ohbm2020-posters/}{``Save the OHBM 2020'' Poster Hall Platform}}{}{}{}

\tldatecventry{2020}{Participant}{}{\osphttphref{alleninstitute.org/what-we-do/brain-science/events-training/2020-nwb-hackathon/}{NWB Hackathon, Allen Institute} \datastandards}{}{}{}

\tlcventry{2019}{0}{Founder/Co-PI/Developer}{}{\ophttphref{dandiarchive.org}{DANDI}\datasharinghref{http://gui.dandiarchive.org}}{}%
{
  A platform for publishing, sharing, and processing neurophysiology data funded by the BRAIN Initiative.
}

\tldatecventry{2019}{Participant}{}{\ophttphref{codeconvergence.org}{DC Code Convergence AFNI Hackathon, NIMH}}{}{}{}

\tldatecventry{2019}{Participant}{}{\ophttphref{www.bonjourstartupmtl.ca/evenement/workshop-making-open-neuroscience-infrastructure-interoperable-2-0/}{Making open neuroscience infrastructure interoperable 2.0 workshop, McGill}}{}{}{}

\tlcventry{2017}{2018}{Co-organizer}{}{\osphttphref{dartmouthbrainhack.github.io}{Brainhack Global 2017, 2018@Dartmouth}}{}{}

\tldatecventry{2017}{Participant}{}{\osphttphref{github.com/nih-fmrif/NIMH\_repro\_2017\_08}{NIMH Workshop on Open and Reproducible Neuroscience} \datasharing \datastandards}{}{}{}

\tldatecventry{2016}{Participant}{}{\osphttphref{neurographics.net/2016/07/28/oden-2016}{Open Data Ecosystem for Neuroscience (ODEN 2016) workshop} \datasharing}{}{}{}

\tldatecventry{2016}{Participant}{}{\href{https://github.com/BANDA-connect/NDA-sprint}{NIH Data Archive workshop} \datasharing}{}{}{}

\tlcventry{2015}{0}{Founding
  Director}{}{\osphttphref{centerforopenneuroscience.org}{Center
    for Open Neuroscience}}{}%
{ A center to facilitate cooperation and dissemination of open
  methods, software platforms, data and methodologies in
  the neuroscience and beyond }

\tlcventry{2015}{0}{Founder/Leading Developer}{}{\ophttphref{github.com/duecredit/duecredit}{DueCredit}}{}%
{
    DueCredit aims to address the problem of inadequate citations of methods and
    software implementations.  This project was initiated in
    collaboration with Matteo Visconti during OHBM 2015 hackathon
}

\tlcventry{2015}{0}{Founder/Lead}{}{\phttphref{open-brain-consent.readthedocs.org}{Open Brain Consent} {\datasharing}}{}%
{
  To streamline data-sharing in neuroimaging this project approaches
  the problem of frequently absent or inadequate provisioning of data
  sharing in existing human research participant consent forms
}

\tlcventry{2013}{2018}{Contributor}{}{\osphttphref{nipy.bic.berkeley.edu}{Nibotmi}}{}%
{
  Continuous integration (CI) service initiated by Matthew Brett (UC
  Berkeley) to solidify quality assurance of scientific Python
  projects.  My contribution is in establishing CI for various
  projects (\eg\ sklearn, pandas) with accent on testing on exotic
  hardware platforms such as UltraSPARC}

\tlcventry{2013}{0}{Founder/PI/Leading Developer}{}{\ophttphref{datalad.org}{DataLad}\datasharinghref{http://datasets.datalad.org}}{}%
{
  Federated de-centralized version controlled automatically crawled data distribution
  \begin{itemize}[leftmargin=1em,parsep=-0.2em]
    \item Offers unified interface to access over 10TB scientific data from various sources
  \end{itemize}
}

\tlcventry{2013}{2015}{Founder/Leading Developer}{}{\phttphref{yarikoptic.github.io/numpy-vbench}{NumPy Benchmarking}}{}%
{
    \href{http://numpy.org}{NumPy} is the core computational library used by Python community.
    I have established a service continuously benchmarking NumPy
    functionality across different development branches to guarantee
    absent performance regressions. Superseded by \href{https://github.com/numpy/numpy/tree/master/benchmarks}{official ASV benchmarks}
}

\tlcventry{2011}{0}{Initiator/Moderator}{}{\osphttphref{github.com/nipy/nipy-artwork}{NiPy Artwork}}{}%
{
    Promotional and informative materials for Python-based scientific software
    projects in \href{http://centerforopenneuroscience.org/engage}{neuroimaging
    and electrophysiology}%
}

\tlcventry{2007}{0}{Founder/Leading Developer}{}{\ophttphref{www.pymvpa.org}{PyMVPA}\datasharinghref{http://data.pymvpa.org}}{}%
{
  A Python framework to streamline application of classical and novel
  statistical learning methods for the analysis of neural data.  This
  project was initiated in collaboration with Michael Hanke.
  \vspace{-0.5em}
  \begin{description}[leftmargin=1em,parsep=0em]
  \item[Popularity] PyMVPA has a world-wide user base and empowered numerous studies\\
    (see \phttp{www.pymvpa.org/whoisusingit.html})
  \end{description}
}

\tlcventry{2007}{0}{Founder/Leading Developer}{}{\ophttphref{neuro.debian.net}{NeuroDebian}\datasharinghref{http://neuro.debian.net/pkglists/toc_pkgs_for_release_data.html}}{}%
{
  NeuroDebian project builds atop of Debian to provide scientific
  community with a turnkey Free and Open-source Software (FOSS)
  platform for neuroscience (and beyond) [\ref{HH12}, \ref{SFN13}-\ref{INCF11}]
  \begin{itemize}[leftmargin=1em,parsep=-0.2em]
    \item Consulting FOSS projects on aspects of legal assurance
      (copyright/licenses), deployment, and quality assurance
    \item Integrating and maintaining (scientific) free and
      open-source software within the Debian GNU/Linux OS (AFNI,
      nibabel, nipy, PsychoPy, \etc)
    \item Mentoring and sponsoring uploads of contributions
      (OpenSesame, Stimfit, OpenWalnut, \etc) to Debian and
      NeuroDebian repositories
%    \item Provisioning VirtualBox appliance for NeuroDebian
%      deployments on Windows and OSX
    \end{itemize}
    \vspace{-0.5em}
  \begin{description}[leftmargin=1em,parsep=0em]
  \item[Popularity] Complete number of ``downloads'' or installations of
    NeuroDebian-maintained software is impossible to assess because
    majority of packages is also uploaded to official Debian
    distribution and thus made available from any of its more than 130
    derivative distributions (such as Ubuntu).  Main NeuroDebian website
    is accessed by more than 20,000 unique IPs each month, is mirrored
    by 8 contributors world-wide, and receives over 900 of periodic
    \href{http://neuro.debian.net/popularity.html\#popularity-contest}{voluntary
      ``popularity contest'' submissions}.
    See also \phttphref{neuro.debian.net/testimonials.html}{NeuroDebian users' testimonials}
  \item[Outreach] In 2010--2018 hosted booth exhibits at annual meetings of
    Society for Neuroscience, and Organization for Human Brain Mapping
  \end{description}
}

\tlcventry{2005}{0}{Developer}{}{\ophttphref{www.debian.org}{Debian Project}}{}%
{
  A widely popular community-driven GNU/Linux distribution with over a hundred of
  derivative distributions and millions of users
}

\tlcventry{2005}{2017}{Leading Developer/Maintainer}{}{\ophttphref{www.fail2ban.org}{Fail2Ban Project}}{}%
{
  A popular intrusion prevention system possibly having \textbf{millions} of users
}

\tlcventry{2004}{0}{FOSS Contributor}{}{\open{Open Source Software}}{}%
{
  I have contributed minor fixes and improvements to nearly a hundred
  of FOSS projects.  Visit \phttp{github.com/yarikoptic} and \phttp{github.com/con} for an overview.
}


\vspace{1em}

\subsection*{EDITING AND REVIEWING}
\cvitem{Associate editor}{\href{http://www.frontiersin.org/brain_imaging_methods}{Frontiers
    in Brain Imaging Methods \openaccess}}

\cvitem{Guest Editor}{\href{http://www.frontiersin.org/neuroinformatics/researchtopics/python_in_neuroscience_ii/1591}{Python
    in Neuroscience II} special issue, Frontiers in Neuroscience \&  Brain Imaging Methods  \openaccess}

%\subsection*{REVIEW EDITOR}
\cvitem{Review editor}{\href{http://www.frontiersin.org/neuroinformatics}{Frontiers in Neuroinformatics}  \openaccess}

\cvitem{Ad-hoc reviewer for journals}{
Brain Structure and Function (past),
Frontiers in Neuroinformatics,
GigaScience,
Human Brain Mapping (past),
IEEE Transactions on Signal Processing (past),
Journal of Cognitive Neuroscience (past),
Journal of Machine Learning Research (past),
Journal of Open Source Software (JOSS),
Nature's Scientific Data,
Neural Computation (past),
NeuroImage (past),
Neuroreport (past),
Pattern Recognition (past),
PLOS Computational Biology,
SPIE (past)
}

\cvitem{Conference Abstracts}{NIPS, SciPy}


\subsection*{MEMBERSHIPS}

\cvitem{Active}{
  \href{http://www.incf.org/programs/datasharing/neuroimaging-task-force}{INCF
    Standards for Data Sharing (Neuroimaging taskforce)},
  \href{http://www.numfocus.org}{NumFOCUS Foundation},
  \href{https://www.python.org/psf}{Python Software Foundation},
  \href{https://www.humanbrainmapping.org}{Organization for Human Brain Mapping}
  \href{https://www.sfn.org}{Society for Neuroscience}
}

\cvitem{Past}{
Association for Psychological Science,
Ukraine Small Academy of Sciences
}

\section{Publications   (Google Scholar h-index: \gschttp{40}, i10-index: \gschttp{67}, \href{https://en.wikipedia.org/wiki/Erd\%C5\%91s\_number}{Erdős number}: \href{https://www.csauthors.net/distance/paul-erdos/yaroslav-o-halchenko}{4})}

\bibliographystyle{abbrvnat}    % also puts URLS out
%\bibliographystyle{apalike}

% Workaround for bibentry + hyperref
 \begingroup
    \makeatletter
    \let\@bibitem\saved@bibitem
    \nobibliography{haxbylab}
  \endgroup



% useful DOI
\renewcommand{\doi}[1]{{doi:~\href{http://dx.doi.org/#1}{#1}}}
\renewcommand{\url}[1]{\href{#1}{#1}}
\newcommand{\rbibentry}[1]{\label{#1}\bibentry{#1}%
  \IfFileExists{pdfs/#1.pdf}{\href{http://haxbylab.dartmouth.edu/publications/#1.pdf}{\hspace{0.5em}[PDF Copy]}}{}%
} % so we could
  % reference them. natbib doesn't know
  % the order for some reason

\subsection{WORK IN PROGRESS {\color{orange}{PREPRINTS, OPEN REVIEW}}}

\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{JND+arxiv24}                % Maturity model
\item {HeuDiConv} — flexible {DICOM} conversion into structured
  directory layouts. JOSS. Under review @ \url{https://github.com/openjournals/joss-reviews/issues/5839}
\item Full Reexecution of Article Analyzing effective functional
{VTA} connectivity. Submitted to Frontiers. Available @ \url{https://github.com/con/opfvta-replication-2023}

\end{bibenum}
\vspace{2em}

\subsection{Standards}
\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{bids:1.7.0} \openaccessdoi{10.5281/zenodo.3720628}  % BIDS 1.3.0 release
% record needs more fixing
% \item \rbibentry{bids:1.9.0} \openaccessdoi{10.5281/zenodo.10175845}  % BIDS 1.9.0 release - new style/line of zenodo records
\end{bibenum}
\vspace{1em}

\subsection{POST-PUBLICATION PEER-REVIEWED ARTICLES}
\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{CH20} \openaccessdoi{10.12688/f1000research.24544.1}  % A new virtue of phantom MRI data...
\item \rbibentry{GPK+17} \openaccessdoi{10.12688/f1000research.10783.1}  %  A very simple, re-executable neuroimaging publication
\end{bibenum}
\vspace{2em}

\subsection{EDITORIALS}
\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{HH_ed15} \openaccessdoi{10.12688/f1000research.6229.1}  % A communication hub for a decentralized collaboration on studying real-life cognition
\end{bibenum}
\vspace{1em}

\let\thefootnote\relax\footnote{\hspace{-2em}\noindent$^\dagger$ authors have contributed equally to the article}

\subsection{SELECTED PRE-PUBLICATION PEER-REVIEWED ARTICLES}

\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{PMA+24} \openaccessdoi{10.1162/imag\_a\_00103} \preprint{PMA+arxiv23}  % BIDS history paper TODO: add non-preprint whenever out
\item \rbibentry{ZJC+24} \openaccessdoi{10.1162/imag\_a\_00074} \preprint{ZJC+biorxiv23}   % BABS
\item \rbibentry{RDA+23} % just accepted! \openaccessdoi{} I was not on preprint \preprint{RDA+biorxiv22} Neurodesk.
\item \rbibentry{SGB+23} \openaccessdoi{10.1038/s41597-023-02614-0} \preprint{SGB+arxiv23}                % archives comparison
\item \rbibentry{FNJ+23} \openaccessdoi{10.1162/imag\_a\_00032} \preprint{FNJ+bioRxiv22} % individualized neural tuning model
\item \rbibentry{TVS+23} \openaccessdoi{10.3389/fnins.2023.1233416}  % PyMVPA BIDS-App
\item \rbibentry{MBB+23} \openaccessdoi{10.1007/s00418-023-02209-1} \preprint{MBB+bioRxiv23}              % OME-Zarr
\item \rbibentry{KCF+23}  % NMIND
\item \rbibentry{HMA+23} \openaccessdoi{10.1371/journal.pbio.3002133}  % BICCN Guide
\item \rbibentry{CTL+22} \openaccessdoi{10.1038/s41592-022-01681-2} \preprint{Ciric_CLT+biorxiv21} % TemplateFlow
\item \rbibentry{MHS+22} \openaccessdoi{10.1002/brb3.2695} \preprint{MHS+biorxiv21} % BMI
\item \rbibentry{MHB+22} \openaccessdoi{10.1038/s41398-022-02211-6}  % working memory in bipolar and unipolar: fMRI
\item \rbibentry{NBA+22} \openaccessdoi{10.1016/j.neuroimage.2022.119623} \preprint{NBA+osf22}  % open and repro neuroimaging
\item \rbibentry{BKG+22} \openaccessdoi{10.3389/fnins.2022.871228}  % Microscopy-BIDS
\item \rbibentry{SHR+22} \openaccessdoi{10.3389/fnhum.2022.749767}  % Resting state/Depression
\item \rbibentry{biccn+21} \openaccessdoi{10.1038/s41586-021-03950-0} \preprint{biccn+biorxiv20}  % BICCN
\item \rbibentry{MGF+21} \openaccessdoi{10.7554/elife.71774}  % OpenNeuro
\item \rbibentry{NLH+21} \openaccessdoi{10.1038/s41597-021-01033-3} \preprint{NLH+narratives:biorxiv20}  % narratives dataset
\item \rbibentry{datalad-joss21} \openaccessdoi{10.21105/joss.03262}  % DataLad JOSS
\item \rbibentry{BHS+21} \openaccessdoi{10.1016/j.mex.2021.101595}  % MethodX for MSH+21?
\item \rbibentry{MSH+21} \openaccessdoi{10.1038/s41598-021-87069-2}  % white matter abnormalities ... bipolar
\item \rbibentry{BBB+21} \openaccessdoi{10.1002/hbm.25351} \preprint{10.31234/osf.io/f6mnp}  % open brain consent
\item \rbibentry{HPW+21} \openaccessdoi{10.1515/nf-2020-0037}  % dRDM
\item \rbibentry{ECF+20} \openaccessdoi{10.1038/s41596-020-0327-3} \preprint{10.1101/694364}  % fmriprep, protocols
\item \rbibentry{KAB+19} \openaccessdoi{10.3389/fninf.2019.00001}  % Everything matters
\item \rbibentry{WHH19}  \openaccessdoi{10.21105/joss.01525}  % multi-match gaze
\item \rbibentry{YMV+19} \openaccessdoi{10.21105/joss.01294}  % PyBIDS
\item \rbibentry{NHC+18} \openaccessdoi{10.3389/fnins.2018.00316} \preprint{10.1101/268144}  % Neural responses to naturalistic clips of behaving animals in two different task contexts
\item \rbibentry{VHG+17} \openaccessdoi{10.1038/s41598-017-12559-1} \preprint{10.1101/138297}  % The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception
\item \rbibentry{NCO+17} \openaccessdoi{10.1093/cercor/bhx138} \preprint{10.1101/045252} % Attention selectively reshapes the geometry of distributed semantic ...
\item \rbibentry{EMH+17} \openaccessdoi{10.1038/nn.4550}  \preprint{10.1101/045104} % Toward standard practices for sharing computer code and programs ...
\item \rbibentry{CSG+16} \openaccessdoi{10.1523/JNEUROSCI.3395-15.2016}  % How the Human Brain Represents Perceived Dangerousness
\item \rbibentry{GAC+16} \openaccessdoi{10.1038/sdata.2016.44} \preprint{10.1101/034561} % BIDS
\item \rbibentry{GHH+16} \openaccessdoi{10.1093/cercor/bhw068}        % Full brain hyper
\item \rbibentry{Vogel+2016} \openaccessdoi{10.1016/j.neuron.2016.10.033}  % To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery
\item \rbibentry{HH15}   \openaccessdoi{10.1186/s13742-015-0072-7}    % Open by design
\item \rbibentry{SHA+15}         % Animacy continuum
\item \rbibentry{GGH+13} \openaccessdoi{10.1016/j.concog.2013.05.002} % Processing of invisible social cues
\item \rbibentry{KFR+13}         % Pattern classification precedes ...
\item \rbibentry{GGH+13b} \openaccessdoi{10.1371/journal.pone.0066620} % Prioritized Detection of Personally Familiar Faces
\item \rbibentry{CGG+12}  \openaccessdoi{10.1523/JNEUROSCI.5547-11.2012} % Representation of biological classes in the human brain
\item \rbibentry{HH12} \openaccessdoi{10.3389/fninf.2012.00022} % Open is not enough. ...
%\footnotemark
\end{bibenum}

\let\thefootnote\relax\footnote{\hspace{-2em}\noindent$^\dagger$ authors have contributed equally to the article}

\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{PBG+12} \openaccessdoi{10.3389/fninf.2012.00009}  % Data sharing in neuroimaging research
\item \rbibentry{GBM+11} \openaccessdoi{10.3389/fninf.2011.00013} % Nipype: a flexible, lightweight  ...
\item \rbibentry{HH11} \openaccessdoi{10.3389/fninf.2011.00008} % Neuroscience runs on GNU/Linux
\item \rbibentry{HGC+11} \openaccessdoi{10.1016/j.neuron.2011.08.026} % A Common, High-Dimensional Model ...
\item \rbibentry{HHH+10} \openaccessdoi{10.3389/neuro.01.007.2010} % Statistical learning analysis in neuroscience: aiming for transparency
\item \rbibentry{RHH+10}         % Six problems for causal inference from fMRI
\item \rbibentry{HHS+09a}        % PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data
\item \rbibentry{HHS+09b} \openaccessdoi{10.3389/neuro.11.003.2009} % PyMVPA: A Unifying Approach to the Analysis of Neuroscientific Data
\item \rbibentry{PHH09}          % Decoding the Large-Scale Structure of Brain Function ...
\item \rbibentry{HH08}           % Brain reading using full brain support vector machines  ...
\item \rbibentry{HHH+07}         % Bottom-up and top-down brain functional ...
\item \rbibentry{HRH+07}         % Dense mode clustering in brain maps
%\item \rbibentry{Halchenko-etal-2004a} % Linear programming fusion -- I think it wasn't peer reviewed
\item \rbibentry{TKG+00}         % Method for image coordinate definition on extended laser paths
\item \rbibentry{TKG+99}         % Approach to parallel-hierarchical network ...
%\item \rbibentry{TSM+98}         % Image Segmentation on the basis of spatial connected features
%\item \rbibentry{MKH97}          % The model of associative processor for numerical data sorting
\end{bibenum}


\vspace{2em}

% \subsection{SELECTED RECENT SOFTWARE RELEASE CITATIONS}
% 
% \begin{bibenum}[ref=\arabic*,parsep=-0.4em]
% \item \rbibentry{seaborn:0.10.1} \openaccessdoi{10.5281/zenodo.3767070} % seaborn
% \end{bibenum}
% 
% 
% \vspace{2em}

\subsection{PH.D. THESIS}

\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{Hal09} \openaccesshref{http://www.oneukrainian.com/Sci/thesis} % Predictive Decoding of Neural Data
\end{bibenum}
\vspace{2em}

%% non-peerreviewed
%\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
%\item \rbibentry{HH09}           % Advancing Neuroimaging Research with Predictive ...
%
%% posters
%\item \rbibentry{CWH+11}         % Scanning parameters for optimal decoding using a 32-channel head coil for fMRI
%\item \rbibentry{HHH10}          % Improving efficiency in cognitive neuroscience research with NeuroDebian
%\item \rbibentry{HMH+04}         % Structural Equation Modeling of Neuroimaging Data: ...
%\item \rbibentry{HHP04}          % Fusion of Functional Brain Imaging Modalities ...
%
%% conference proceedings
%\item \rbibentry{TMH+11}         % Debian Med: Integrated software environment 
%\end{bibenum}


\subsection{CHAPTERS}

\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{HHP05} \openaccesshref{http://www.oneukrainian.com/Sci/fusion} % Advanced Image Processing in Magnetic Resonance Imaging: ...
\end{bibenum}
\vspace{2em}

\subsection{INTERVIEWS}
\sloppy
\begin{bibenum}[ref=\arabic*,parsep=-0.4em]
\item \rbibentry{RSE2019PODCAST}
\item \rbibentry{OHBM2017BLOG}
\item \rbibentry{SFN13}
\item \rbibentry{FLOSS4SCIENCE11}
\item \rbibentry{INCF11}
\end{bibenum}
\vspace{1em}



\section{Invited Talks}

% not detailed one
% \tldatecventry{2015}{OHBM 2015}{Honolulu, HI USA}{}{}{}
% \tldatecventry{2014}{PyCon 2014}{Montr\'eal, Canada}{}{}{}
% \tldatecventry{2014}{SRI International}{Menlo Park, CA}{}{}{}
% \tldatecventry{2013}{SEA Software Engineering Conference}{UCAR}{Boulder, CO}{}{}
% \tldatecventry{2013}{University of Pennsylvania}{Philadelphia, PA}{}{}{}
% \tldatecventry{2012}{INCF Bootcamp 2012}{Munich, Germany}{}{}{}
% \tldatecventry{2011}{Annual Meeting of Society for Neuroscience}{Washington, DC}{}{}{}
% \tldatecventry{2011}{EuroSciPy satellite ``Python in Neuroscience''}{Paris, France}{}{}{}
% \tldatecventry{2011}{EuroSciPy}{Paris, France}{}{}{}
% \tldatecventry{2011}{DebConf10}{New York, NY}{}{}{}
% \tldatecventry{2009}{Dartmouth College}{Hanover, NH}{}{}{}
% \tldatecventry{2009}{Berkeley}{CA}{}{}{}
% \tldatecventry{2009}{University of Hawaii at Manoa}{Honolulu, HI}{}{}{}

%\tldatecventry{2015}{OHBM 2015}{Overview of statistical evaluation techniques adopted by publicly available MVPA toolboxes}{}{Honolulu, HI USA}{}
%\tldatecventry{2014}{PyCon 2014}{Fail2Ban -- keep your boxes skiddie-free}{}{Montr\'eal, Canada}{}

% TODOs:
% - some round table

\tldatecventry{2024}{NSF}{The Brain Imaging Data Structure (BIDS): An open community standard for neuroscience}{POSE Workshop}{Alexandria, VA \phttps{bit.ly/bids-nsf-pose-2024}}{}
\tldatecventry{2023}{McGill}{The Brain Imaging Data Structure (BIDS): an open science standard to support the neuroimaging community}{TOSI Open Science Prize}{Montreal, Canada \phttps{bit.ly/bids-tosi-prize-2023}}{}
\tldatecventry{2023}{Lawrence Berkeley National Laboratory}{Building an archive for large-scale neuroscience data}{}{Berkeley, CA \phttps{datasets.datalad.org/centerforopenneuroscience/talks/2023-lbl-building-dandi.html}}{}
\tldatecventry{2022}{UTexas Austin}{Towards The Big Data Neuroscience Nirvana}{2022 Big Data Neuroscience Workshop}{Austin, TX \phttps{datasets.datalad.org/centerforopenneuroscience/talks/2022-tx-big-neuroscience.html}}{}
\tldatecventry{2021}{Open Minds Pitt}{Phantom data matter in Neuroimaging QA/QC beyond basic scanner QA}{}{\phttps{www.youtube.com/watch?v=HcS9\_LFdoPw}}{}
\tldatecventry{2019}{Brown University}{Making science more open and reproducible by design, tools can help}{}{Providence, RI}{}
\tldatecventry{2019}{UMass Medical School}{Tales from the {CON}: A few studies of a curious mind}{}{Worcester, MA}{}
\tldatecventry{2019}{MILA AI Institute}{DataLad: Decentralized data management for collaborative, open, and reproducible science}{}{Montreal, Canada}{}
\tldatecventry{2017}{McGill/MNI}{DataLad -- decentralized data distribution for consumption and sharing of scientific datasets}{}{Montreal, Canada}{}
\tldatecventry{2016}{MRN}{The road to open neuroscience: from analysis methods to software platforms}{}{Albuquerque, NM}{}
\tldatecventry{2014}{SRI International}{From statistical learning to an open-source, turnkey platform for neuroimaging}{}{Menlo Park, CA}{}
\tldatecventry{2013}{SEA Software Engineering Conference}{Open is not enough: benefits from Debian as an integrated, community-driven computing platform}{}{UCAR,Boulder, CO}{\phttp{sea.ucar.edu/event/open-not-enough-benefits-debian-integrated-community-driven-computing-platform}}
\cventry{}{University of Pennsylvania}{Environments for efficient contemporary research in neuroimaging}{}{Philadelphia, PA}{}
\tldatecventry{2012}{INCF Bootcamp 2012}{Applied NeuroDebian: Python in Neuroimaging}{}{Munich, Germany}{}
% \tldatecventry{2011}{Annual Meeting of Society for Neuroscience}{Multivariate analysis strategies of neuroimaging data in PyMVPA}{}{Washington, DC}{}
% \tldatecventry{2011}{EuroSciPy satellite ``Python in Neuroscience''}{The virtues and sins of PyMVPA}{}{Paris, France}{}
\tldatecventry{2011}{EuroSciPy}{$\pi$`s in Debian or Scientific Debian: NumPy, SciPy and beyond}{}{Paris, France}{}
% \tldatecventry{2011}{DebConf10}{Debian: The ultimate platform for neuroimaging research}{}{New York, NY}{}
% \tldatecventry{2009}{Dartmouth College}{An ecosystem of neuroimaging, statistical learning, and open-source software to make research more efficient, more open, and more fun}{}{Hanover, NH}{}
\tldatecventry{2009}{UC Berkeley}{Reliable Decoding of Neural Data}{}{Berkeley, CA}{}
\cventry{}{University of Hawaii at Manoa}{PyMVPA: Fathom Brain Function through Multivariate Pattern Analysis}{}{Honolulu, HI}{}

\section{Selected Conference Talks}

\tldatecventry{2024}{distribits 2024}{"What's in the DataLad sandwich" AKA DataLad "ecosystem"}{}{Dusseldorf, Germany}{\phttps{datasets.datalad.org/centerforopenneuroscience/talks/2024-distribits-datalad.html/} \phttps{www.youtube.com/watch?v=Mkb7qpYaL7o}}


\section{Didactic Activities} % Teaching \& Lecturing}

\tlcventry{2012}{0}{}{PBS Department, Dartmouth College}{Consulting undergraduate and graduate students in
  application of statistical learning methodologies in their
  neuroimaging-based research}{}{}
% TODO: point to instern publications/abstracts
\ytllabelcventry{2015}{0}{0em}{\ifdefined\boringnumbers
  2015--current\fi}{Mentoring Student Interns}{}{}{}{
  2018-2019. Adina Wagner, Germany\\
  2018. Taylor M. Olson, Dartmouth, WISP\\
  2017. Oliver Contier, Germany\\
  2017-2021. Christopher P. Cheng, Dartmouth\\
  2015. Ana Marina Jimenez Santiago, Mexico
}
\ytllabelcventry{2018}{0}{0em}{\ifdefined\boringnumbers
  2018--current\fi}{Undergraduate Students (Co-)Advisor}{}{}{}{
  2019-2020. Mark A. Taylor, CS Department, Dartmouth College\\
  2018-2019. Cara E. Van Uden, CS Department, Dartmouth College
}
\ytllabelcventry{2017}{0}{0em}{\ifdefined\boringnumbers 2017--current\fi}{Lecturer/Instructor}{Various Workshops \& Webinars}{}{}{
  2023. \phttpshref{www.incf.org/incf-short-course-introduction-neuroinformatics-2023}{INCF Short Course: Introduction to Neuroinformatics 2023}\\
  \hspace{1em}·
  \href{https://docs.google.com/presentation/d/1FYJ9Wm35kPV0\_8LrfdCw2yKI8GCg63J-hzZNiAGWNC8}{Ontologies,
    databases, and standards}\\
  \hspace{1em}·
  \href{https://docs.google.com/presentation/d/1Mo02oMg4Nl9IzzfQVwu7X\_wpdi8UJzV296EbxT7F0vY/edit?usp=sharing}{Scientific workflows and computational infrastructure}\\
  2023. \phttpshref{https://ww6.aievolution.com/hbm2301/index.cfm?do=ev.viewEv\&ev=1252}{OHBM 2023: Open and reproducible neuroimaging:: Research Data Management} \\
  2021. \phttphref{www.abcd-repronim.org}{ABCD ReproNim Course} \\
  2020-2021. \phttphref{www.repronim.org/webinar-series.html}{ReproNim webinars} \\
  2019. \phttphref{mindsummerschool.org}{MIND: Methods in Neuroscience at Dartmouth} summer school \\
  2019. Training for Reproducible Neuroimaging, pre-OHBM2019, Rome, Italy\\
  2019. \href{https://coastal-coding.github.io}{Coastal Coding for Reproducible Neuroimaging}, Miami, FL\\
  2018. \href{http://www.repronim.org/sfn2018-training/}{Training for Reproducible Neuroimaging}, SfN2018, San Diego, CA\\
  2018. \href{http://www.repronim.org/ohbm2018-training/}{Training for Reproducible Neuroimaging}, OHBM2018, Singapore\\
  2017. \href{https://www.sfn.org/annual-meeting/neuroscience-2017/sessions-and-events/satellite-events}{Training
    for Reproducible Neuroimaging}, Symposia@SfN2017, Washington, DC\\
  2017. \phttphref{www.onlinebrainintensive.com}{Online Brain Intensive} \\
  2017. \phttphref{summer-mind.github.io}{MIND: Methods in Neuroscience at Dartmouth} summer school \\
  2017. Workshop on Open and Reproducible Neuroscience, NIMH, Bethesda, MD, USA \\
  2017. Nipype workshop, MIT, Cambridge, MA, USA 
}
\ytllabelcventry{2010}{0}{0em}{\ifdefined\boringnumbers 2010--current\fi}{Co-lecturer}{PyMVPA Workshops}{}{}{
  2015. PBS Department, Dartmouth College, NH USA\\
  2015. University of York, York UK\\
  2014. Justus-Liebig-Universitat, Giessen Germany\\
  2014. Hanse-Wissenschaftskolleg Institute for Advanced Study, Delmenhorst Germany\\
  2012. Center for Behavioral Brain Sciences, Magdeburg Germany \\
  2010. Psychology and Brain Sciences, Dartmouth College, Hanover USA
}
% TODO: TA for Jim's 2013 Fall MVPA class?
\tldatecventry{2019}{Lecturer}{Introduction to Programming for Psychologists \& Neuroscientists
  (PSYC161)}{}{}{Psychology and Brain Sciences Department, Dartmouth College}
\tldatecventry{2015}{Lecturer}{Introduction to Programming for Psychologists \& Neuroscientists
  (PSYC161)}{}{}{Psychology and Brain Sciences Department, Dartmouth College}
\tldatecventry{2000}{Teaching Assistant}{Intermediate Programming
  (CS251)}{}{}{\href{mailto:TODO}{Prof. David Ackley}, Computer Science Department, UNM}


\section{Awards, Honors \& Fellowships}
\tldatecventry{1998}{Fellow}{The International Scientific Fund Representatives in Ukrainian Studentship Award}{}{}{}
\tldatecventry{1996}{Award}{}{}{The Academy of Sciences of Ukraine}{Project: \emph{Information-Measuring System With Optical Transformation Biomedical Information}}{}
\tldatecventry{1995}{Fellow}{The International Soros Science Educational Program (ISSEP) Studentship Award}{}{}{}
          \cventry{}{6th place}{}{}{ACM South-Eastern European Regional Programming Contest}{1st place at VSTU}
          \cventry{}{4th place}{Physics Contest among Colleges and Universities of Ukraine}{}{}{1st place at VSTU}
\tldatecventry{1994}{1st place}{Regional Programming Contest}{}{}{}
\tldatecventry{1993}{3rd place}{Regional Physics Contest}{}{}{}


\section{Extra Qualifications}

\cvitem{Languages}{Fluent in Russian, Ukrainian and English.}
\cvitem{Hobbies}{Major contributor to the
  \phttphref{neuro.debian.net/coffeeart.html}{Coffee Art Collection}}


\end{document}

%%% Local Variables:
%%% mode: latex
%%% TeX-PDF-mode: t
%%% TeX-master: t
%%% ispell-local-dictionary: "american"
%%% auto-fill-inhibit-regexp: ".*[&|].*[&|].*"
%%% End:
